lab works on the dynamics of complex molecular systems. Our main
interest is on the understanding of the working principles of molecular
machines. We focus on organic self-assembled molecules in general, and
on proteins in particular. We have developed network-based models to
study the basic features contributing to structure/function
relationships in these systems. These include:
models in 1-D (GNM) and 3-D (ANM). Trial ANM server
control architecture underlying the adaptive mechanisms in these
systems. Available as a server under Services link.
along the networks to identify key locations participating in their
identification based on perturbation/response scanning (PRS) to study
the near-equilibrium dynamics. Trial PRS
server is located at http://midst.sabanciuniv.edu/prs
relaxation times contributing to equilibrium fluctuations.
of the tools we have developed are available for download or as a
server under Services link.